1. CKMRpop::empty_crp
    A tibble like that produced by 'compile_related_pairs()', but with zero rows
    csv| xlsx| json| ndjson| rda| rds
    tbl_df
  2. CKMRpop::example_amms
    a list of examples of ancestry-match matrices
    json| rda| rds
    list
  3. CKMRpop::growth_0.01_results
    The result of running spip with growth 0.01 in the population-growth-with-spip vignette
    json| rda| rds
    list
  4. CKMRpop::growth_n0.005_results
    The result of running spip with growth -0.005 in the population-growth-with-spip vignette
    json| rda| rds
    list
  5. CKMRpop::half_first_cousin_amm
    A half-first cousin ancestry match matrix
    csv| json| rda| rds
    matrix|7 x
  6. CKMRpop::necessary_generations
    Minimum number of generations for the ancestry match matrix to include relationship types
    json| rda| rds
    integer
  7. CKMRpop::relationship_zone_names
    relationship zone names
    json| rda| rds
    character
  8. CKMRpop::species_1_life_history
    a list of life-history / life-table data for a hypothetical species
    json| rda| rds
    list
  9. CKMRpop::species_1_slurped_results
    The result of running spip in the species_1_simulation vignette.
    json| rda| rds
    list
  10. CKMRpop::species_1_slurped_results_100_loci
    The result of running spip in the species_1_simulation vignette with 100 loci.
    json| rda| rds
    list
  11. CKMRpop::species_1_slurped_results_1gen
    The result of running spip in the species_1_simulation vignette and slurping out with num_generations = 1.
    json| rda| rds
    list
  12. CKMRpop::species_2_life_history
    a list of life-history / life-table data for another hypothetical species
    json| rda| rds
    list
  13. CKMRpop::three_pops_no_mig_slurped_results
    The result of running spip and slurping the output in the three population case with no migration
    json| rda| rds
    list
  14. CKMRpop::three_pops_with_mig_slurped_results
    The result of running spip and slurping the output in the three population case with migration
    json| rda| rds
    list
  15. gaiah::breeding_wiwa_genetic_posteriors
    Posterior probs of genetic region origin from Leave-one-out cross validation for breeding WIWAs
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2358 x 5
  16. gaiah::breeding_wiwa_isotopes
    Isotope values, latitude, longitude and more data from 357 breeding Wilson's warblers
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|357 x 15
  17. gaiah::example_isotope_posteriors
    Output of 'isotope_posterior_probs' for two migrant birds.
    rda| rds
    list
  18. gaiah::genetic_regions
    RasterStack showing the 6 genetic regions that Wilson's warblers may be assigned to
    rda| rds
    RasterStack
  19. gaiah::isomap_job54152_prediction
    Predicted isotope values from ISOMAP
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|10786 x 12
  20. gaiah::migrant_wiwa_genetic_posteriors
    Posterior probs of genetic region of origin for 926 WIWAs sampled during migration
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|5556 x 6
  21. gaiah::migrant_wiwa_isotopes
    Isotope values and meta data for 688 migrating Wilson's Warblers
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|688 x 14
  22. gaiah::wiwa_breed
    a raster of the breeding range of Wilson's warbler
    rda| rds
    RasterLayer
  23. gaiah::wiwa_habitat_unclipped
    RasterLayer showing the MaxEnt habitat suitability model unclipped by the known breeding range
    rda| rds
    RasterLayer
  24. gaiah::wrld_simpl
    Simple map of the world
    rda| rds
    SpatialPolygonsDataFrame
  25. gscramble::GSP
    Example Genomic Simulation Pedigree, GSP, with 13 members
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|13 x 11
  26. gscramble::GSP_opts
    A list of tibbles specifying the pedigrees available from 'createGSP()'
    csv| json| rda| rds
    list
  27. gscramble::Geno
    Genotype matrix of 78 individuals and 100 SNP markers
    csv| json| rda| rds
    matrix|78 x
  28. gscramble::I_meta
    Metadata for 78 individuals
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|78 x 2
  29. gscramble::M_meta
    Metadata for 100 molecular markers
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|100 x 3
  30. gscramble::RecRates
    Recombination rate data for many roughly 1 Mb bins
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|198 x 5
  31. gscramble::RepPop1
    A simple example of a reppop table
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4 x 3
  32. gscramble::RepPop4
    Another simple example of a reppop table
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|12 x 3
  33. gscramble::example_chrom_lengths
    Lengths of the three chromosomes used in the example data set
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3 x 2
  34. gscramble::example_segments
    Example of a segments tibble
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|286 x 14
  35. gscramble::gsp3
    Tibble holding specification for a 5 member genomic permutation pedigree.
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|5 x 11
  36. gscramble::gsp4
    Tibble holding specification for a 7 member genomic permutation pedigree.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|7 x 11
  37. rubias::alewife
    Microsat data from alewife herring reference populations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1070 x 38
  38. rubias::blueback
    Microsat data from blueback herring reference populations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1252 x 40
  39. rubias::chinook
    SNP data from chinook reference populations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|7301 x 186
  40. rubias::chinook_collection_levels
    a vector that gives a desired sort order of the chinook collections
    json| rda| rds
    character
  41. rubias::chinook_mix
    SNP data from Chinook salmon taken in May/August 2015 from California fisheries
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2256 x 186
  42. rubias::chinook_repunit_levels
    a vector that gives a desired sort order of the chinook repunits
    json| rda| rds
    character
  43. rubias::perfect_chinook
    perfect-assignment genetic data for chinook.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|7301 x 18
  44. rubias::perfect_chinook_mix
    perfect-assignment mixture genetic data for chinook.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1488 x 18
  45. rubias::sim_spec_examples
    List of example ways of specifying repunit and collection quantities in simulations
    csv| json| rda| rds
    list
  46. rubias::small_chinook_mix
    Small sample of SNP data from Chinook salmon taken in May/August 2015 from California fisheries
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 186
  47. rubias::small_chinook_ref
    SNP data from selected chinook reference populations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|909 x 186
  48. whoa::lobster_buz_2000
    Restriction-associated digest (RAD) sequence data from 36 lobsters at 2000 single nucleotide polymorphisms (SNPs)
    rda| rds
    vcfR
  49. whoa::lobster_buz_2000_as_012_matrix
    An 012 matrix from (RAD) sequence data from 36 lobsters at 2000 single nucleotide polymorphisms (SNPs)
    csv| json| rda| rds
    matrix|2000 x