Pedigrees Available from create_GSP()
The function create_GSP() allows the user to
quickly create several different pedigree structures that are
“saturated” in the sense of using all the genomic material of the
founders. There are 15 different pedigrees, and they can be specified by
the user according to whether the user wants to have any of the
following four hybrid categories to be present amongst the simulated
descendants:
F1: a first generation F1 hybrid—the product of mating between two parentals, one from population p1 and the other from population p2.F2: the product of a mating between two F1sF1B: an F1-backcross—the product of a mating between an F1 and a parental (non-admixed) individual from population p1.F1B2: a second-generation F1-backcross—the product of a mating between an F1B and another parental from population p1.
The following images show the pedigrees created by
create_GSP() with different inputs (TRUE or
FALSE) for the four parameters, F1,
F2, F1B, F1B2, to the
function.
See the documentation ?create_GSP for more
information.
F1 = TRUE, F2 = FALSE, F1B = FALSE, F1B2 = FALSE,
F1 = FALSE, F2 = TRUE, F1B = FALSE, F1B2 = FALSE,
F1 = TRUE, F2 = TRUE, F1B = FALSE, F1B2 = FALSE,
F1 = FALSE, F2 = FALSE, F1B = TRUE, F1B2 = FALSE,
F1 = TRUE, F2 = FALSE, F1B = TRUE, F1B2 = FALSE,
F1 = FALSE, F2 = TRUE, F1B = TRUE, F1B2 = FALSE,
F1 = TRUE, F2 = TRUE, F1B = TRUE, F1B2 = FALSE,
F1 = FALSE, F2 = FALSE, F1B = FALSE, F1B2 = TRUE,
F1 = TRUE, F2 = FALSE, F1B = FALSE, F1B2 = TRUE,
F1 = FALSE, F2 = TRUE, F1B = FALSE, F1B2 = TRUE,
F1 = TRUE, F2 = TRUE, F1B = FALSE, F1B2 = TRUE,
F1 = FALSE, F2 = FALSE, F1B = TRUE, F1B2 = TRUE,
F1 = TRUE, F2 = FALSE, F1B = TRUE, F1B2 = TRUE,
F1 = FALSE, F2 = TRUE, F1B = TRUE, F1B2 = TRUE,
F1 = TRUE, F2 = TRUE, F1B = TRUE, F1B2 = TRUE,
