{ "_id": "6a103780acfb0bcc41c9a768", "Package": "gscramble", "Type": "Package", "Title": "Simulating Admixed Genotypes Without Replacement", "Version": "1.0.1.9000", "Authors@R": "c(\nperson(given = c(\"Eric\", \"C.\"), \"Anderson\", , \"eric.anderson@noaa.gov\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1326-0840\")\n),\nperson(given = c(\"Rachael\", \"M.\"), \"Giglio\", , \"rachael.giglio@usda.gov\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4183-3546\")\n),\nperson(given = c(\"Matt\", \"G.\"), \"DeSaix\", , \"mgdesaix@gmail.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-5721-0311\")\n),\nperson(given = c(\"Timothy\", \"J.\"), \"Smyser\", , \"timothy.j.smyser@usda.gov\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4542-3077\")\n)\n)", "Description": "A genomic simulation approach for creating biologically\ninformed individual genotypes from empirical data that 1)\nsamples alleles from populations without replacement, 2)\nsegregates alleles based on species-specific recombination\nrates. 'gscramble' is a flexible simulation approach that\nallows users to create pedigrees of varying complexity in order\nto simulate admixed genotypes. Furthermore, it allows users to\ntrack haplotype blocks from the source populations through the\npedigrees.", "License": "CC0", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "URL": "https://github.com/eriqande/gscramble", "BugReports": "https://github.com/eriqande/gscramble/issues", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://eriqande.r-universe.dev", "Date/Publication": "2024-03-04 23:03:42 UTC", "RemoteUrl": "https://github.com/eriqande/gscramble", "RemoteRef": "HEAD", "RemoteSha": "752d7cf83c0bd3943486b641ee072700d99dd28e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-12 06:22:43 UTC", "User": "root" }, "Author": "Eric C. Anderson [aut, cre] (ORCID:\n),\nRachael M. Giglio [aut] (ORCID:\n),\nMatt G. 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"create_GSP", "title": "Create a GSP from user inputs about what type of hybrids from which populations to create hybrids", "topics": [ "create_GSP" ] }, { "page": "drop_segs_down_gsp", "title": "High level function for dropping segments down a GSP", "topics": [ "drop_segs_down_gsp" ] }, { "page": "example_chrom_lengths", "title": "Lengths of the three chromosomes used in the example data set", "topics": [ "example_chrom_lengths" ] }, { "page": "example_segments", "title": "Example of a segments tibble", "topics": [ "example_segments" ] }, { "page": "Geno", "title": "Genotype matrix of 78 individuals and 100 SNP markers", "topics": [ "Geno" ] }, { "page": "gscramble2newhybrids", "title": "Convert 'gscramble' output to newhybrids format", "topics": [ "gscramble2newhybrids" ] }, { "page": "gscramble2plink", "title": "Write 'gscramble' I_meta, M_meta, and Geno to a plink file", "topics": [ "gscramble2plink" ] }, { "page": "GSP", "title": "Example Genomic Simulation Pedigree, GSP, with 13 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